Documentation

• Graphical User Interface Documentation
  • Main GUI
  • TMS Tab
  • tDCS Tab
  • Position Window
  • Electrode Window
  • Conductivities Window
  • Simulation Options Window
• Command Line Tools
  • charm
  • convert_3_to_4
  • dwi2cond
  • simnibs
  • simnibs_gui
  • simnibs_python
  • eeg_positions
  • meshmesh
  • msh2cortex
  • msh2nii
  • nii2msh
  • mni2subject
  • mni2subject_coords
  • subject2mni
  • subject2mni_coords
  • get_fields_at_coordinates
  • calc_B
  • add_tissues_to_upsampled
  • register
  • coil2nifti
• Simulation Data Structures
  • SESSION
  • TDCSLIST
  • TMSLIST
  • COND
  • ELECTRODE
  • POSITION
  • TDCSLEADFIELD
• Optimization Data Structures
  • TDCSoptimize
  • TDCStarget
  • TDCSavoid
  • TDCSDistributedOptimize
  • TMSoptimize
  • TesFlexOptimization
  • TmsFlexOptimization
  • RegionOfInterest
  • Electrode and array layouts for TesFlexOptimization
• Neuronavigation Data Import/Export
  • Localite
  • Brainsight
  • Softaxic
  • General Notes
• Output Files
  • Head Segmentation
  • Simulations
• File Formats in SimNIBS
  • Head Models
  • TMS Coils
  • Simulation Results
  • Surface Fields
  • Volumes
  • HDF5
• Coordinates in SimNIBS
  • Definitions
  • MNI Transformations
• Standard Conductivity Values
• Coil Models Included in SimNIBS
  • Default Coil Files
  • Flexible Coil Files
  • Previous Coil Files
  • Extra Coil Files
• Python Library Documentation
  • I/O Functions
  • Mesh Classes
  • Transformations
  • Utilities
  • Simulations